J3_6BY1_029

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_029 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1398

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6BY1|1|CA|C|698
6BY1|1|CA|A|699
6BY1|1|CA|G|700
*
6BY1|1|CA|C|732
6BY1|1|CA|G|733
6BY1|1|CA|A|734
6BY1|1|CA|A|735
6BY1|1|CA|C|736
*
6BY1|1|CA|G|760
6BY1|1|CA|A|761
6BY1|1|CA|U|762
6BY1|1|CA|G|763

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2