J3_6BY1_037

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6BY1|1|CA|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_037 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1542

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6BY1|1|CA|C|2517
6BY1|1|CA|A|2518
6BY1|1|CA|U|2519
6BY1|1|CA|C|2520
*
6BY1|1|CA|G|2545
6BY1|1|CA|U|2546
6BY1|1|CA|A|2547
*
6BY1|1|CA|U|2561
6BY1|1|CA|U|2562
6BY1|1|CA|U|2563
6BY1|1|CA|A|2564
6BY1|1|CA|A|2565
6BY1|1|CA|A|2566
6BY1|1|CA|G|2567

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C6

50S ribosomal protein L36

Chain CD

50S ribosomal protein L3

Chain CK

50S ribosomal protein L14