J3_6BZ6_032

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BZ6_032 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1096

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6BZ6|1|XA|C|936
6BZ6|1|XA|A|937
6BZ6|1|XA|A|938
6BZ6|1|XA|G|939
*
6BZ6|1|XA|C|1344
6BZ6|1|XA|U|1345
6BZ6|1|XA|A|1346
6BZ6|1|XA|G|1347
6BZ6|1|XA|U|1348
6BZ6|1|XA|A|1349
6BZ6|1|XA|A|1350
*
6BZ6|1|XA|U|1372
6BZ6|1|XA|G|1373
6BZ6|1|XA|A|1374
6BZ6|1|XA|A|1375
6BZ6|1|XA|U|1376
6BZ6|1|XA|A|1377
6BZ6|1|XA|C|1378
6BZ6|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9