J3_6BZ6_079

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BZ6_079 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1028

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6BZ6|1|QA|U|1073
6BZ6|1|QA|G|1074
*
6BZ6|1|QA|U|1083
6BZ6|1|QA|G|1084
6BZ6|1|QA|U|1085
6BZ6|1|QA|U|1086
*
6BZ6|1|QA|G|1099
6BZ6|1|QA|C|1100
6BZ6|1|QA|A|1101
6BZ6|1|QA|A|1102

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QE

30S ribosomal protein S5