J3_6C0F_008
3D structure
- PDB id
- 6C0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6C0F|1|1|U|343, 6C0F|1|1|A|351, 6C0F|1|2|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6C0F_008 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0815
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
6C0F|1|1|C|340
6C0F|1|1|G|341
6C0F|1|1|A|342
6C0F|1|1|U|343
6C0F|1|1|A|344
6C0F|1|1|G|345
6C0F|1|1|C|346
6C0F|1|1|G|347
6C0F|1|1|A|348
6C0F|1|1|A|349
6C0F|1|1|C|350
6C0F|1|1|A|351
6C0F|1|1|A|352
6C0F|1|1|G|353
6C0F|1|1|U|354
6C0F|1|1|A|355
6C0F|1|1|C|356
*
6C0F|1|1|G|363
6C0F|1|1|G|364
6C0F|1|1|A|365
6C0F|1|1|A|366
6C0F|1|1|A|367
6C0F|1|1|G|368
*
6C0F|1|2|C|21
6C0F|1|2|U|22
6C0F|1|2|U|23
6C0F|1|2|G|24
Current chains
- Chain 1
- Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 7
- Nucleolar protein 16
- Chain C
- 60S ribosomal protein L4-A
- Chain I
- Ribosome production factor 1
- Chain Y
- 60S ribosomal protein L26-A
- Chain j
- 60S ribosomal protein L37-A
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