J3_8C3A_047

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

8C3A|1|1|U|343, 8C3A|1|1|A|351, 8C3A|1|4|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24554.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

8C3A|1|1|C|340
8C3A|1|1|G|341
8C3A|1|1|A|342
8C3A|1|1|U|343
8C3A|1|1|A|344
8C3A|1|1|G|345
8C3A|1|1|C|346
8C3A|1|1|G|347
8C3A|1|1|A|348
8C3A|1|1|A|349
8C3A|1|1|C|350
8C3A|1|1|A|351
8C3A|1|1|A|352
8C3A|1|1|G|353
8C3A|1|1|U|354
8C3A|1|1|A|355
8C3A|1|1|C|356
*
8C3A|1|1|G|363
8C3A|1|1|G|364
8C3A|1|1|A|365
8C3A|1|1|A|366
8C3A|1|1|A|367
8C3A|1|1|G|368
*
8C3A|1|4|C|21
8C3A|1|4|U|22
8C3A|1|4|U|23
8C3A|1|4|G|24

Current chains

Chain 1

25S

Chain 4

5.8S

Nearby chains

Chain 9

Ribosomal protein L24

Chain AK

60S ribosomal protein L37-B

Chain AM

60S ribosomal protein L39

Chain l

60S ribosomal protein L4-B