J3_6C0F_009
3D structure
- PDB id
- 6C0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6C0F|1|1|A|398, 6C0F|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6C0F_009 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.1317
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6C0F|1|1|A|369
6C0F|1|1|U|370
6C0F|1|1|G|371
6C0F|1|1|A|372
6C0F|1|1|A|373
6C0F|1|1|A|374
6C0F|1|1|A|375
6C0F|1|1|G|376
6C0F|1|1|A|377
6C0F|1|1|A|378
6C0F|1|1|C|379
*
6C0F|1|1|G|390
6C0F|1|1|A|391
6C0F|1|1|G|392
6C0F|1|1|U|393
6C0F|1|1|G|394
6C0F|1|1|A|395
6C0F|1|1|A|396
6C0F|1|1|A|397
6C0F|1|1|A|398
6C0F|1|1|A|399
6C0F|1|1|G|400
6C0F|1|1|U|401
6C0F|1|1|A|402
6C0F|1|1|C|403
6C0F|1|1|G|404
*
6C0F|1|2|C|19
6C0F|1|2|U|20
Current chains
- Chain 1
- Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain D
- Protein MAK16
- Chain I
- Ribosome production factor 1
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
Coloring options: