J3_6C4I_005

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C4I_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1508

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6C4I|1|A|G|1055
6C4I|1|A|G|1056
6C4I|1|A|A|1057
*
6C4I|1|A|U|1081
6C4I|1|A|U|1082
6C4I|1|A|U|1083
6C4I|1|A|A|1084
6C4I|1|A|A|1085
6C4I|1|A|A|1086
6C4I|1|A|G|1087
*
6C4I|1|A|C|1102
6C4I|1|A|A|1103
6C4I|1|A|C|1104

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11