J3_6C4I_021
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6C4I|1|a|A|975, 6C4I|1|a|G|976, 6C4I|1|a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6C4I_021 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0894
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6C4I|1|a|U|955
6C4I|1|a|U|956
6C4I|1|a|U|957
6C4I|1|a|A|958
6C4I|1|a|A|959
6C4I|1|a|U|960
6C4I|1|a|U|961
6C4I|1|a|C|962
*
6C4I|1|a|G|973
6C4I|1|a|A|974
6C4I|1|a|A|975
6C4I|1|a|G|976
6C4I|1|a|A|977
6C4I|1|a|A|978
6C4I|1|a|C|979
6C4I|1|a|C|980
6C4I|1|a|U|981
6C4I|1|a|U|982
6C4I|1|a|A|983
6C4I|1|a|C|984
*
6C4I|1|a|G|1221
6C4I|1|a|G|1222
6C4I|1|a|C|1223
6C4I|1|a|U|1224
6C4I|1|a|A|1225
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
- Chain v
- Peptide chain release factor 2
Coloring options: