J3_6C4I_028
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6C4I|1|A|U|34, 6C4I|1|A|U|448, 6C4I|1|A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6C4I_028 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0645
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6C4I|1|A|C|32
6C4I|1|A|C|33
6C4I|1|A|U|34
6C4I|1|A|G|35
*
6C4I|1|A|C|445
6C4I|1|A|G|446
6C4I|1|A|A|447
6C4I|1|A|U|448
6C4I|1|A|A|449
6C4I|1|A|G|450
6C4I|1|A|U|451
6C4I|1|A|G|452
6C4I|1|A|A|453
6C4I|1|A|A|454
6C4I|1|A|C|455
6C4I|1|A|C|456
6C4I|1|A|A|457
6C4I|1|A|G|458
6C4I|1|A|U|459
6C4I|1|A|A|460
6C4I|1|A|C|461
*
6C4I|1|A|G|468
6C4I|1|A|G|469
6C4I|1|A|A|470
6C4I|1|A|A|471
6C4I|1|A|A|472
6C4I|1|A|G|473
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L23
Coloring options: