J3_6C5L_013

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_013 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0929

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6C5L|1|BA|G|30
6C5L|1|BA|C|31
*
6C5L|1|BA|G|474
6C5L|1|BA|U|475
6C5L|1|BA|G|476
6C5L|1|BA|A|477
6C5L|1|BA|A|478
6C5L|1|BA|A|479
6C5L|1|BA|A|480
6C5L|1|BA|G|481
*
6C5L|1|BA|C|509
6C5L|1|BA|C|510

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22

Chain BY

50S ribosomal protein L24