J3_6C5L_021

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6C5L|1|BA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_021 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1395

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6C5L|1|BA|G|1344
6C5L|1|BA|C|1345
6C5L|1|BA|G|1346
6C5L|1|BA|G|1347
6C5L|1|BA|G|1348
6C5L|1|BA|A|1349
6C5L|1|BA|C|1350
*
6C5L|1|BA|G|1381
6C5L|1|BA|G|1382
6C5L|1|BA|C|1383
6C5L|1|BA|A|1384
6C5L|1|BA|G|1385
*
6C5L|1|BA|C|1402
6C5L|1|BA|C|1403

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L23