J3_6C5L_033

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_033 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2478

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6C5L|1|CA|C|990
6C5L|1|CA|U|991
6C5L|1|CA|U|992
6C5L|1|CA|G|993
*
6C5L|1|CA|C|1045
6C5L|1|CA|A|1046
6C5L|1|CA|G|1047
*
6C5L|1|CA|C|1210
6C5L|1|CA|U|1211
6C5L|1|CA|U|1212
6C5L|1|CA|A|1213
6C5L|1|CA|C|1214
6C5L|1|CA|G|1215

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CN

30S ribosomal protein S14 type Z

Chain CY

Peptide chain release factor 2