J3_6C5L_041

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6C5L|1|DA|G|686, 6C5L|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_041 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1186

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6C5L|1|DA|C|683
6C5L|1|DA|G|684
6C5L|1|DA|A|685
6C5L|1|DA|G|686
6C5L|1|DA|C|687
6C5L|1|DA|U|688
6C5L|1|DA|A|689
*
6C5L|1|DA|U|773
6C5L|1|DA|A|774
6C5L|1|DA|G|775
*
6C5L|1|DA|C|791
6C5L|1|DA|G|792
6C5L|1|DA|A|793
6C5L|1|DA|G|794

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2