J3_6C5L_052

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6C5L|1|AA|C|48, 6C5L|1|AA|A|50, 6C5L|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_052 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0935

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6C5L|1|AA|G|46
6C5L|1|AA|C|47
6C5L|1|AA|C|48
6C5L|1|AA|U|49
6C5L|1|AA|A|50
6C5L|1|AA|A|51
6C5L|1|AA|G|52
*
6C5L|1|AA|U|359
6C5L|1|AA|A|360
6C5L|1|AA|G|361
6C5L|1|AA|G|362
6C5L|1|AA|A|363
6C5L|1|AA|A|364
6C5L|1|AA|U|365
6C5L|1|AA|C|366
6C5L|1|AA|U|367
*
6C5L|1|AA|A|393
6C5L|1|AA|G|394
6C5L|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain DI

50S ribosomal protein L9