J3_6C5L_062

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_062 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.1069

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6C5L|1|BA|G|1424
6C5L|1|BA|G|1425
6C5L|1|BA|G|1426
6C5L|1|BA|A|1427
6C5L|1|BA|C|1428
6C5L|1|BA|G|1429
*
6C5L|1|BA|C|1564
6C5L|1|BA|C|1565
*
6C5L|1|BA|G|1568
6C5L|1|BA|A|1569
6C5L|1|BA|A|1570
6C5L|1|BA|A|1571
6C5L|1|BA|A|1572
6C5L|1|BA|G|1573
6C5L|1|BA|C|1574

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2