J3_6C5L_077

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUC*GUUG*CAUUAAAG

Length

16 nucleotides

Bulged bases

6C5L|1|DA|A|2518, 6C5L|1|DA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_077 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.2087

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69441.1

Basepair signature

cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

1

Unit IDs

6C5L|1|DA|C|2517
6C5L|1|DA|A|2518
6C5L|1|DA|U|2519
6C5L|1|DA|C|2520
*
6C5L|1|DA|G|2545
6C5L|1|DA|U|2546
6C5L|1|DA|U|2547
6C5L|1|DA|G|2548
*
6C5L|1|DA|C|2560
6C5L|1|DA|A|2561
6C5L|1|DA|U|2562
6C5L|1|DA|U|2563
6C5L|1|DA|A|2564
6C5L|1|DA|A|2565
6C5L|1|DA|A|2566
6C5L|1|DA|G|2567

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L13

Chain DO

50S ribosomal protein L14