J3_6C5L_078

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_078 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1181

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6C5L|1|AA|C|936
6C5L|1|AA|A|937
6C5L|1|AA|A|938
6C5L|1|AA|G|939
*
6C5L|1|AA|C|1344
6C5L|1|AA|U|1345
6C5L|1|AA|A|1346
6C5L|1|AA|G|1347
6C5L|1|AA|U|1348
6C5L|1|AA|A|1349
6C5L|1|AA|A|1350
*
6C5L|1|AA|U|1372
6C5L|1|AA|G|1373
6C5L|1|AA|A|1374
6C5L|1|AA|A|1375
6C5L|1|AA|U|1376
6C5L|1|AA|A|1377
6C5L|1|AA|C|1378
6C5L|1|AA|G|1379

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AW

Transfer RNA; tRNA