J3_6C5L_081

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_081 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.2973

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6C5L|1|CA|U|1073
6C5L|1|CA|G|1074
*
6C5L|1|CA|U|1083
6C5L|1|CA|G|1084
6C5L|1|CA|U|1085
6C5L|1|CA|U|1086
6C5L|1|CA|G|1087
*
6C5L|1|CA|C|1098
6C5L|1|CA|G|1099
6C5L|1|CA|C|1100
6C5L|1|CA|A|1101
6C5L|1|CA|A|1102

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CE

30S ribosomal protein S5