3D structure

PDB id
6CAE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CAE_025 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.0665
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6CAE|1|1a|C|1063
6CAE|1|1a|G|1064
6CAE|1|1a|U|1065
6CAE|1|1a|C|1066
6CAE|1|1a|A|1067
6CAE|1|1a|G|1068
*
6CAE|1|1a|C|1107
6CAE|1|1a|G|1108
6CAE|1|1a|C|1109
6CAE|1|1a|A|1110
6CAE|1|1a|A|1111
6CAE|1|1a|C|1112
6CAE|1|1a|C|1113
*
6CAE|1|1a|G|1187
6CAE|1|1a|A|1188
6CAE|1|1a|C|1189
6CAE|1|1a|G|1190
6CAE|1|1a|A|1191
6CAE|1|1a|C|1192
6CAE|1|1a|G|1193

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1c
30S ribosomal protein S3
Chain 1e
30S ribosomal protein S5
Chain 1g
30S ribosomal protein S7
Chain 1i
30S ribosomal protein S9
Chain 1j
30S ribosomal protein S10
Chain 1n
30S ribosomal protein S14 type Z

Coloring options:


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