J3_6CAE_055
3D structure
- PDB id
- 6CAE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 6CAE|1|2a|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6CAE_055 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.0905
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6CAE|1|2a|C|1237
6CAE|1|2a|A|1238
6CAE|1|2a|A|1239
6CAE|1|2a|U|1240
6CAE|1|2a|G|1241
*
6CAE|1|2a|C|1296
6CAE|1|2a|C|1297
6CAE|1|2a|C|1298
6CAE|1|2a|A|1299
6CAE|1|2a|G|1300
6CAE|1|2a|U|1301
6CAE|1|2a|U|1302
6CAE|1|2a|C|1303
*
6CAE|1|2a|G|1334
6CAE|1|2a|C|1335
6CAE|1|2a|C|1336
6CAE|1|2a|G|1337
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2g
- 30S ribosomal protein S7
- Chain 2m
- 30S ribosomal protein S13
- Chain 2u
- 30S ribosomal protein Thx
- Chain 2y
- Transfer RNA; tRNA
Coloring options: