3D structure

PDB id
6CAO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosomal decoding complex at ambient temperature
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
6CAO|1|A|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CAO_019 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.0565
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6CAO|1|A|C|1116
6CAO|1|A|G|1117
6CAO|1|A|C|1118
*
6CAO|1|A|G|1155
6CAO|1|A|G|1156
6CAO|1|A|A|1157
6CAO|1|A|C|1158
6CAO|1|A|U|1159
6CAO|1|A|G|1160
6CAO|1|A|C|1161
*
6CAO|1|A|G|1175
6CAO|1|A|A|1176
6CAO|1|A|G|1177
6CAO|1|A|G|1178
6CAO|1|A|A|1179
6CAO|1|A|A|1180
6CAO|1|A|G|1181
6CAO|1|A|G|1182
6CAO|1|A|A|1183
6CAO|1|A|G|1184

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain I
30S ribosomal protein S9
Chain N
30S ribosomal protein S14 type Z

Coloring options:


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