J3_6CAP_009
3D structure
- PDB id
- 6CAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6CAP_009 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0688
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6CAP|1|A|C|1063
6CAP|1|A|G|1064
6CAP|1|A|U|1065
6CAP|1|A|C|1066
6CAP|1|A|A|1067
6CAP|1|A|G|1068
*
6CAP|1|A|C|1107
6CAP|1|A|G|1108
6CAP|1|A|C|1109
6CAP|1|A|A|1110
6CAP|1|A|A|1111
6CAP|1|A|C|1112
6CAP|1|A|C|1113
*
6CAP|1|A|G|1187
6CAP|1|A|A|1188
6CAP|1|A|C|1189
6CAP|1|A|G|1190
6CAP|1|A|A|1191
6CAP|1|A|C|1192
6CAP|1|A|G|1193
Current chains
- Chain A
- 16S Ribosomal RNA rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain C
- 30S ribosomal protein S3
- Chain E
- RIBOSOMAL PROTEIN S5
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
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