J3_6CAR_006

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CAR_006 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0652

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6CAR|1|A|U|943
6CAR|1|A|G|944
6CAR|1|A|G|945
6CAR|1|A|A|946
*
6CAR|1|A|U|1235
6CAR|1|A|A|1236
6CAR|1|A|C|1237
*
6CAR|1|A|G|1337
6CAR|1|A|G|1338
6CAR|1|A|A|1339
6CAR|1|A|A|1340

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain M

30S ribosomal protein S13

Chain U

30S ribosomal protein Thx