J3_6CFJ_009

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFJ_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.053

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6CFJ|1|1A|G|1390
6CFJ|1|1A|C|1391
6CFJ|1|1A|G|1392
6CFJ|1|1A|G|1393
6CFJ|1|1A|G|1394
6CFJ|1|1A|A|1395
6CFJ|1|1A|C|1396
*
6CFJ|1|1A|G|1427
6CFJ|1|1A|G|1428
6CFJ|1|1A|C|1429
6CFJ|1|1A|A|1430
6CFJ|1|1A|G|1431
*
6CFJ|1|1A|C|1448
6CFJ|1|1A|C|1449

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23