J3_6CFJ_010
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6CFJ_010 not in the Motif Atlas
- Homologous match to J3_7RQB_010
- Geometric discrepancy: 0.0507
- The information below is about J3_7RQB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.3
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6CFJ|1|1A|U|2113
6CFJ|1|1A|U|2114
6CFJ|1|1A|G|2115
*
6CFJ|1|1A|C|2218
6CFJ|1|1A|U|2219
6CFJ|1|1A|A|2220
6CFJ|1|1A|A|2221
6CFJ|1|1A|C|2222
*
6CFJ|1|1A|G|2235
6CFJ|1|1A|G|2236
6CFJ|1|1A|A|2237
6CFJ|1|1A|C|2238
6CFJ|1|1A|A|2239
6CFJ|1|1A|G|2240
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1D
- 50S ribosomal protein L2
- Chain 1I
- 50S ribosomal protein L9
Coloring options: