3D structure

PDB id
6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6CFJ|1|1A|U|474, 6CFJ|1|1A|C|482
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CFJ_056 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0612
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07616.1
Basepair signature
cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Number of instances in this motif group
10

Unit IDs

6CFJ|1|1A|C|32
6CFJ|1|1A|U|33
6CFJ|1|1A|C|34
6CFJ|1|1A|G|35
*
6CFJ|1|1A|C|471
6CFJ|1|1A|G|472
6CFJ|1|1A|A|473
6CFJ|1|1A|U|474
6CFJ|1|1A|A|475
6CFJ|1|1A|G|476
6CFJ|1|1A|C|477
6CFJ|1|1A|G|478
6CFJ|1|1A|C|479
6CFJ|1|1A|A|480
6CFJ|1|1A|C|481
6CFJ|1|1A|C|482
6CFJ|1|1A|A|483
6CFJ|1|1A|G|484
6CFJ|1|1A|U|485
6CFJ|1|1A|A|486
6CFJ|1|1A|C|487
*
6CFJ|1|1A|G|494
6CFJ|1|1A|G|495
6CFJ|1|1A|A|496
6CFJ|1|1A|A|497
6CFJ|1|1A|A|498
6CFJ|1|1A|G|499

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1F
50S ribosomal protein L4
Chain 1U
50S ribosomal protein L20
Chain 1X
50S ribosomal protein L23

Coloring options:


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