J3_6CFJ_069

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFJ_069 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0737

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6CFJ|1|2A|G|1424
6CFJ|1|2A|G|1425
6CFJ|1|2A|G|1426
6CFJ|1|2A|A|1427
6CFJ|1|2A|C|1428
6CFJ|1|2A|G|1429
*
6CFJ|1|2A|C|1564
6CFJ|1|2A|C|1565
*
6CFJ|1|2A|G|1568
6CFJ|1|2A|A|1569
6CFJ|1|2A|A|1570
6CFJ|1|2A|A|1571
6CFJ|1|2A|A|1572
6CFJ|1|2A|G|1573
6CFJ|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2