J3_6CFK_009

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.037

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6CFK|1|1A|G|1390
6CFK|1|1A|C|1391
6CFK|1|1A|G|1392
6CFK|1|1A|G|1393
6CFK|1|1A|G|1394
6CFK|1|1A|A|1395
6CFK|1|1A|C|1396
*
6CFK|1|1A|G|1427
6CFK|1|1A|G|1428
6CFK|1|1A|C|1429
6CFK|1|1A|A|1430
6CFK|1|1A|G|1431
*
6CFK|1|1A|C|1448
6CFK|1|1A|C|1449

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23