3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CUC*GAG*UAGAAG
Length
12 nucleotides
Bulged bases
6CFK|1|1A|G|2346
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CFK_011 not in the Motif Atlas
Homologous match to J3_7RQB_011
Geometric discrepancy: 0.0362
The information below is about J3_7RQB_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.4
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

6CFK|1|1A|C|2307
6CFK|1|1A|U|2308
6CFK|1|1A|C|2309
*
6CFK|1|1A|G|2333
6CFK|1|1A|A|2334
6CFK|1|1A|G|2335
*
6CFK|1|1A|U|2344
6CFK|1|1A|A|2345
6CFK|1|1A|G|2346
6CFK|1|1A|A|2347
6CFK|1|1A|A|2348
6CFK|1|1A|G|2349

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 10
50S ribosomal protein L27
Chain 1B
5S ribosomal RNA; 5S rRNA
Chain 1G
50S ribosomal protein L5
Chain 1S
50S ribosomal protein L18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1588 s