J3_6CFK_031

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6CFK|1|2A|G|686, 6CFK|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_031 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0348

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6CFK|1|2A|C|683
6CFK|1|2A|G|684
6CFK|1|2A|A|685
6CFK|1|2A|G|686
6CFK|1|2A|C|687
6CFK|1|2A|U|688
6CFK|1|2A|A|689
*
6CFK|1|2A|U|773
6CFK|1|2A|A|774
6CFK|1|2A|G|775
*
6CFK|1|2A|C|791
6CFK|1|2A|G|792
6CFK|1|2A|A|793
6CFK|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2