J3_6CFK_039

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6CFK|1|2A|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_039 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0595

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6CFK|1|2A|C|2517
6CFK|1|2A|A|2518
6CFK|1|2A|U|2519
6CFK|1|2A|C|2520
*
6CFK|1|2A|G|2545
6CFK|1|2A|U|2546
6CFK|1|2A|U|2547
*
6CFK|1|2A|A|2561
6CFK|1|2A|U|2562
6CFK|1|2A|U|2563
6CFK|1|2A|A|2564
6CFK|1|2A|A|2565
6CFK|1|2A|A|2566
6CFK|1|2A|G|2567

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14