J3_6CFK_047

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_047 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0801

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6CFK|1|2a|C|936
6CFK|1|2a|A|937
6CFK|1|2a|A|938
6CFK|1|2a|G|939
*
6CFK|1|2a|C|1344
6CFK|1|2a|U|1345
6CFK|1|2a|A|1346
6CFK|1|2a|G|1347
6CFK|1|2a|U|1348
6CFK|1|2a|A|1349
6CFK|1|2a|A|1350
*
6CFK|1|2a|U|1372
6CFK|1|2a|G|1373
6CFK|1|2a|A|1374
6CFK|1|2a|A|1375
6CFK|1|2a|U|1376
6CFK|1|2a|A|1377
6CFK|1|2a|C|1378
6CFK|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9