J3_6CFK_053

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

6CFK|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_053 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.1383

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6CFK|1|2a|C|1116
6CFK|1|2a|G|1117
6CFK|1|2a|C|1118
*
6CFK|1|2a|G|1155
6CFK|1|2a|G|1156
6CFK|1|2a|A|1157
6CFK|1|2a|C|1158
6CFK|1|2a|U|1159
6CFK|1|2a|G|1160
6CFK|1|2a|C|1161
*
6CFK|1|2a|G|1175
6CFK|1|2a|A|1176
6CFK|1|2a|G|1177
6CFK|1|2a|G|1178
6CFK|1|2a|A|1179
6CFK|1|2a|A|1180
6CFK|1|2a|G|1181
6CFK|1|2a|G|1182
6CFK|1|2a|A|1183
6CFK|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z