J3_6CFK_057

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

6CFK|1|1A|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_057 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.0738

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6CFK|1|1A|U|258
6CFK|1|1A|A|259
6CFK|1|1A|A|260
6CFK|1|1A|A|261
6CFK|1|1A|C|262
*
6CFK|1|1A|G|282
6CFK|1|1A|G|283
6CFK|1|1A|G|284
6CFK|1|1A|U|285
6CFK|1|1A|C|286
6CFK|1|1A|G|287
6CFK|1|1A|U|288
6CFK|1|1A|G|289
*
6CFK|1|1A|C|396
6CFK|1|1A|G|397

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1I

50S ribosomal protein L9