J3_6CFK_058

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6CFK|1|1A|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_058 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0464

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6CFK|1|1A|C|321
6CFK|1|1A|G|322
6CFK|1|1A|A|323
6CFK|1|1A|A|324
6CFK|1|1A|G|325
*
6CFK|1|1A|C|340
6CFK|1|1A|G|341
6CFK|1|1A|C|342
6CFK|1|1A|C|343
6CFK|1|1A|A|344
6CFK|1|1A|G|345
6CFK|1|1A|A|346
6CFK|1|1A|G|347
6CFK|1|1A|A|348
6CFK|1|1A|G|349
*
6CFK|1|1A|C|361
6CFK|1|1A|G|362
6CFK|1|1A|U|363
6CFK|1|1A|A|364
6CFK|1|1A|G|365

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24