J3_6CFK_064

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6CFK|1|1a|U|1212, 6CFK|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_064 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1482

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

6CFK|1|1a|C|990
6CFK|1|1a|U|991
6CFK|1|1a|U|992
6CFK|1|1a|G|993
6CFK|1|1a|A|994
6CFK|1|1a|C|995
6CFK|1|1a|A|996
6CFK|1|1a|U|997
*
6CFK|1|1a|A|1044
6CFK|1|1a|C|1045
6CFK|1|1a|A|1046
6CFK|1|1a|G|1047
*
6CFK|1|1a|C|1210
6CFK|1|1a|U|1211
6CFK|1|1a|U|1212
6CFK|1|1a|A|1213
6CFK|1|1a|C|1214
6CFK|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z