3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
6CFK|1|2A|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CFK_067 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.0671
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6CFK|1|2A|C|297
6CFK|1|2A|G|298
6CFK|1|2A|A|299
6CFK|1|2A|A|300
6CFK|1|2A|G|301
*
6CFK|1|2A|C|316
6CFK|1|2A|G|317
6CFK|1|2A|C|318
6CFK|1|2A|C|319
6CFK|1|2A|A|320
6CFK|1|2A|G|321
6CFK|1|2A|A|322
6CFK|1|2A|G|323
6CFK|1|2A|A|324
6CFK|1|2A|G|325
*
6CFK|1|2A|C|337
6CFK|1|2A|G|338
6CFK|1|2A|U|339
6CFK|1|2A|A|340
6CFK|1|2A|G|341

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2F
50S ribosomal protein L4
Chain 2Y
50S ribosomal protein L24

Coloring options:


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