J3_6CFL_007

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFL_007 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0344

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6CFL|1|1A|C|1344
6CFL|1|1A|G|1345
6CFL|1|1A|U|1346
6CFL|1|1A|A|1347
6CFL|1|1A|A|1348
6CFL|1|1A|G|1349
*
6CFL|1|1A|C|1671
6CFL|1|1A|G|1672
6CFL|1|1A|G|1673
*
6CFL|1|1A|U|1686
6CFL|1|1A|C|1687
6CFL|1|1A|A|1688
6CFL|1|1A|G|1689

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains