J3_6CFL_012

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6CFL|1|1A|A|2530, 6CFL|1|1A|U|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFL_012 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0248

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6CFL|1|1A|C|2529
6CFL|1|1A|A|2530
6CFL|1|1A|U|2531
6CFL|1|1A|C|2532
*
6CFL|1|1A|G|2557
6CFL|1|1A|U|2558
6CFL|1|1A|U|2559
*
6CFL|1|1A|A|2573
6CFL|1|1A|U|2574
6CFL|1|1A|U|2575
6CFL|1|1A|A|2576
6CFL|1|1A|A|2577
6CFL|1|1A|A|2578
6CFL|1|1A|G|2579

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1O

50S ribosomal protein L14