J3_6CFL_050

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFL_050 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1559

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6CFL|1|2a|C|990
6CFL|1|2a|U|991
6CFL|1|2a|U|992
6CFL|1|2a|G|993
*
6CFL|1|2a|C|1045
6CFL|1|2a|A|1046
6CFL|1|2a|G|1047
*
6CFL|1|2a|C|1210
6CFL|1|2a|U|1211
6CFL|1|2a|U|1212
6CFL|1|2a|A|1213
6CFL|1|2a|C|1214
6CFL|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z