J3_6CFL_054

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

6CFL|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFL_054 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.1279

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.1

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6CFL|1|2a|C|1116
6CFL|1|2a|G|1117
6CFL|1|2a|C|1118
*
6CFL|1|2a|G|1155
6CFL|1|2a|G|1156
6CFL|1|2a|A|1157
6CFL|1|2a|C|1158
6CFL|1|2a|U|1159
6CFL|1|2a|G|1160
6CFL|1|2a|C|1161
*
6CFL|1|2a|G|1175
6CFL|1|2a|A|1176
6CFL|1|2a|G|1177
6CFL|1|2a|G|1178
6CFL|1|2a|A|1179
6CFL|1|2a|A|1180
6CFL|1|2a|G|1181
6CFL|1|2a|G|1182
6CFL|1|2a|A|1183
6CFL|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z