J3_6CFL_058
3D structure
- PDB id
- 6CFL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 6CFL|1|1A|G|345
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6CFL_058 not in the Motif Atlas
- Homologous match to J3_9DFE_006
- Geometric discrepancy: 0.0475
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6CFL|1|1A|C|321
6CFL|1|1A|G|322
6CFL|1|1A|A|323
6CFL|1|1A|A|324
6CFL|1|1A|G|325
*
6CFL|1|1A|C|340
6CFL|1|1A|G|341
6CFL|1|1A|C|342
6CFL|1|1A|C|343
6CFL|1|1A|A|344
6CFL|1|1A|G|345
6CFL|1|1A|A|346
6CFL|1|1A|G|347
6CFL|1|1A|A|348
6CFL|1|1A|G|349
*
6CFL|1|1A|C|361
6CFL|1|1A|G|362
6CFL|1|1A|U|363
6CFL|1|1A|A|364
6CFL|1|1A|G|365
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1Y
- 50S Ribosomal Protein L24
Coloring options: