J3_6CFL_060

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFL_060 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0682

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6CFL|1|1A|G|1470
6CFL|1|1A|G|1471
6CFL|1|1A|G|1472
6CFL|1|1A|A|1473
6CFL|1|1A|C|1474
6CFL|1|1A|G|1475
*
6CFL|1|1A|C|1611
6CFL|1|1A|C|1612
*
6CFL|1|1A|G|1615
6CFL|1|1A|A|1616
6CFL|1|1A|A|1617
6CFL|1|1A|A|1618
6CFL|1|1A|A|1619
6CFL|1|1A|G|1620
6CFL|1|1A|C|1621

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2