J3_6CFL_066

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6CFL|1|2A|U|504, 6CFL|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFL_066 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0561

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6CFL|1|2A|G|30
6CFL|1|2A|C|31
*
6CFL|1|2A|G|474
6CFL|1|2A|U|475
6CFL|1|2A|G|476
6CFL|1|2A|A|477
6CFL|1|2A|A|478
6CFL|1|2A|A|479
6CFL|1|2A|A|480
6CFL|1|2A|G|481
6CFL|1|2A|A|482
6CFL|1|2A|A|483
6CFL|1|2A|C|484
*
6CFL|1|2A|G|496
6CFL|1|2A|A|497
6CFL|1|2A|G|498
6CFL|1|2A|U|499
6CFL|1|2A|G|500
6CFL|1|2A|A|501
6CFL|1|2A|A|502
6CFL|1|2A|A|503
6CFL|1|2A|U|504
6CFL|1|2A|A|505
6CFL|1|2A|G|506
6CFL|1|2A|A|507
6CFL|1|2A|G|508
6CFL|1|2A|C|509
6CFL|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S Ribosomal Protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S Ribosomal Protein L24