J3_6CZR_001

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.1032

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6CZR|1|1A|G|29
6CZR|1|1A|C|30
*
6CZR|1|1A|G|499
6CZR|1|1A|U|500
6CZR|1|1A|G|501
6CZR|1|1A|A|502
6CZR|1|1A|A|503
6CZR|1|1A|A|504
6CZR|1|1A|A|505
6CZR|1|1A|G|506
*
6CZR|1|1A|C|533
6CZR|1|1A|C|534

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24