J3_6CZR_007

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_007 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1201

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6CZR|1|1A|C|1343
6CZR|1|1A|G|1344
6CZR|1|1A|U|1345
6CZR|1|1A|A|1346
6CZR|1|1A|A|1347
6CZR|1|1A|G|1348
*
6CZR|1|1A|C|1670
6CZR|1|1A|G|1671
6CZR|1|1A|G|1672
*
6CZR|1|1A|U|1685
6CZR|1|1A|C|1686
6CZR|1|1A|A|1687
6CZR|1|1A|G|1688

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains