J3_6CZR_010

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_010 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0935

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6CZR|1|1A|U|2112
6CZR|1|1A|U|2113
6CZR|1|1A|G|2114
*
6CZR|1|1A|C|2217
6CZR|1|1A|U|2218
6CZR|1|1A|A|2219
6CZR|1|1A|A|2220
6CZR|1|1A|C|2221
*
6CZR|1|1A|G|2234
6CZR|1|1A|G|2235
6CZR|1|1A|A|2236
6CZR|1|1A|C|2237
6CZR|1|1A|A|2238
6CZR|1|1A|G|2239

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1D

50S ribosomal protein L2

Chain 1I

50S ribosomal protein L9