J3_6CZR_018

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6CZR|1|1a|U|849, 6CZR|1|1a|A|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6CZR|1|1a|C|810
6CZR|1|1a|U|811
6CZR|1|1a|A|812
6CZR|1|1a|G|813
*
6CZR|1|1a|C|835
6CZR|1|1a|G|836
6CZR|1|1a|A|837
6CZR|1|1a|A|838
6CZR|1|1a|G|839
*
6CZR|1|1a|C|846
6CZR|1|1a|G|847
6CZR|1|1a|U|848
6CZR|1|1a|U|849
6CZR|1|1a|A|850
6CZR|1|1a|A|851
6CZR|1|1a|G|852

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1h

30S ribosomal protein S8