Motif J3_85054.3 Version J3_85054.3 of this group appears in releases 3.89 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-7 | 2-13 | 3-6 | 4-5 | 7-12 | 8-11 | 8-13 | 9-10 | 11-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_6CZR_018 | 6CZR | 0.1094 | 2 | 1a | SSU rRNA | C | 810 | U | 811 | A | 812 | G | 813 | * | C | 835 | G | 836 | A | 837 | A | 838 | G | 839 | * | C | 846 | G | 847 | U | 848 | A | 850 | G | 852 | cWW | ncSW | ntWW | tHS | cWW | ntHS | cWW | |||
| 2 | J3_4LFB_001 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 826 | U | 827 | A | 828 | G | 829 | * | C | 857 | G | 858 | A | 859 | A | 860 | G | 861 | * | C | 868 | G | 869 | U | 870 | A | 872 | G | 874 | cWW | cSW | tWW | tHS | cWW | tHS | ntWH | cWW | ||
| 3 | J3_5J7L_004 | 5J7L | 0.1934 | 2 | AA | SSU rRNA | C | 826 | U | 827 | U | 828 | G | 829 | * | C | 857 | G | 858 | G | 859 | A | 860 | G | 861 | * | C | 868 | G | 869 | U | 870 | A | 872 | G | 874 | cWW | tWW | tHS | cWW | tHS | ntWH | cWW | |||
| 4 | J3_1G1X_006 | 1G1X | 0.9062 | 1 | I+J | 16S RIBOSOMAL RNA | C | 586 | G | 587 | G | 588 | C | 589 | * | G | 650 | C | 651 | U | 652 | G | 654 | A | 655 | * | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | cWW | cWW | tWH | tHS | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG*CGAAG*CGUUAAG | 2 |
| CUUG*CGGAG*CGUUAAG | 1 |
| CGGC*GCUAGA*UGACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAA*GUUAA | 2 |
| UU*GGA*GUUAA | 1 |
| GG*CUAG*GAC | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.40 | Max 0.93
Coloring options: